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Publications

"Science knows no country, because knowledge belongs to humanity, and is the torch which illuminates the world."

– Louis Pasteur

Schmitt-Ulms, C., Kayabolen, A., Manero-Carranza, M., Zhou, N., Donnelly, K., Nuccio, S.P., Kato, K., Nishimasu, H., Gootenberg, J.S.#, and Abudayyeh, O.O.#

bioRxiv

February 1, 2024

Villiger, L., Joung, J., Koblan, L., Weissman, J.S., Abudayyeh, O.O.#, and Gootenberg, J.S.#.

Nature Reviews Molecular Cell Biology

November 1, 2023

Jiang, K., Lim, J., Sgrizzi, S., Trinh, M., Kayabolen, A., Yutin, N., Koonin, E.V., Gootenberg, J.S.# Abudayyeh, O.O.#

Science Advances

September 27, 2023

Kaiyi Jiang, Justin Lim, Samantha Sgrizzi, Michael Trinh, Alisan Kayabolen, Natalya Yutin, Eugene V. Koonin, Omar O. Abudayyeh, Jonathan S. Gootenberg

bioRxiv

June 14, 2023

Joung, J., Ma, S., Tay, T., Geiger-Schuller, K.R., Kirchgatterer, P.C., Verdine, V.K., Guo, B., Arias-Garcia, M.A., Allen, W.E., Singh, A., Kuksenko, O., Abudayyeh, O.O., Gootenberg, J.S., Fu, Z., Macrae, R.K., Buenrostro, J.D., Regev, A., and Zhang, F.

Cell

January 5, 2023

Yarnall, Matthew T. N., Ioannidi, Eleonora I., Schmitt-Ulms, Cian, Krajeski, Rohan N., Lim, Justin, Villiger, Lukas, Zhou, Wenyuan, Jiang, Kaiyi, Roberts, Nathaniel, Zhang, Liyang, Vakulskas, Christopher A., Walker, John A., Kadina, Anastasia P., Zepeda, Adrianna E., Holden, Kevin, Abudayyeh, Omar O., Gootenberg, Jonathan S.

Nature Biotechnology

November 24, 2022

Patchsung, Maturada, Homchan, Aimorn, Aphicho, Kanokpol, Suraritdechachai, Surased, Wanitchanon, Thanyapat, Pattama, Archiraya, Sappakhaw, Khomkrit, Meesawat, Piyachat, Wongsatit, Thanakrit, Athipanyasilp, Artittaya, Jantarug, Krittapas, Athipanyasilp, Niracha, Buahom, Juthamas, Visanpattanasin, Supapat, Niljianskul, Nootaree, Chaiyen, Pimchai, Tinikul, Ruchanok, Wichukchinda, Nuanjun, Mahasirimongkol, Surakameth, Sirijatuphat, Rujipas, Angkasekwinai, Nasikarn, Crone, Michael A, Freemont, Paul S, Joung, Julia, Ladha, Alim, Abudayyeh, Omar, Gootenberg, Jonathan, Zhang, Feng, Chewapreecha, Claire, Chanarat, Sittinan, Horthongkham, Navin, Pakotiprapha, Danaya, Uttamapinant, Chayasith.

The CRISPR Journal

November 11, 2022

Kato, K., Okazaki, S., Schmitt-Ulms, C., Jiang, K., Zhou, W., Ishikawa, J., Isayama, Y., Adachi, S., Nishizawa, T., Makarova, K.S., Koonin, E.V., Abudayyeh, O.O.#, Gootenberg, J.S.#, Nishamasu, H.

Science

November 3, 2022

Strecker J., Demircioglu, F.E., Li, D., Faure, G., Wilkinson, M.E., Gootenberg, J.S., Abudayyeh, O., Nishimasu, H., Macrae, R.K., and Zhang, F.

Science

November 3, 2022

Jiang K,Koob J,Chen XD,Krajeski RN,Zhang Y,Villiger L,Zhou W, Gootenberg JS, Chen F, Abudayyeh OO

Nature Biotechnology

October 27, 2022

Kato, K., Zhou, W., Okazaki, S., Isayama, Y., Nishizawa, T., Gootenberg, J.S.#, Abudayyeh, O.O.#, Nishamasu, H.

Cell

June 23, 2022

Yarnall, Matthew T. N., Ioannidi, Eleonora I., Schmitt-Ulms, Cian, Krajeski, Rohan N., Lim, Justin, Villiger, Lukas, Zhou, Wenyuan, Jiang, Kaiyi, Roberts, Nathaniel, Zhang, Liyang, Vakulskas, Christopher A., Walker, John A., Kadina, Anastasia P., Zepeda, Adrianna E., Holden, Kevin, Abudayyeh, Omar O., Gootenberg, Jonathan S

bioRxiv

November 1, 2021

Ozcan A,Krajeski R,Ioannidi E,Lee B,Gardner A,Makarova KS,Koonin EV,Abudayyeh OO,Gootenberg JS

Nature

September 6, 2021

Kaminski MM,Abudayyeh OO,Gootenberg JS,Zhang F,Collins JJ

Nat Biomed Eng

July 1, 2021

Danko D,Bezdan D,Afshin EE,Ahsanuddin S,Bhattacharya C,Butler DJ,Chng KR,Donnellan D,Hecht J,Jackson K,Kuchin K,Karasikov M,Lyons A,Mak L,Meleshko D,Mustafa H,Mutai B,Neches RY,Ng A,Nikolayeva O,Nikolayeva T,Png E,Ryon KA,Sanchez JL,Shaaban H,Sierra MA,Thomas D,Young B,Abudayyeh OO,Alicea J,Bhattacharyya M,Blekhman R,Castro-Nallar E,Cañas AM,Chatziefthimiou AD,Crawford RW,De Filippis F,Deng Y,Desnues C,Dias-Neto E,Dybwad M,Elhaik E,Ercolini D,Frolova A,Gankin D,Gootenberg JS,Graf AB,Green DC,Hajirasouliha I,Hastings JJA,Hernandez M,Iraola G,Jang S,Kahles A,Kelly FJ,Knights K,Kyrpides NC,Łabaj PP,Lee PKH,Leung MHY,Ljungdahl PO,Mason-Buck G,McGrath K,Meydan C,Mongodin EF,Moraes MO,Nagarajan N,Nieto-Caballero M,Noushmehr H,Oliveira M,Ossowski S,Osuolale OO,Özcan O,Paez-Espino D,Rascovan N,Richard H,Rätsch G,Schriml LM,Semmler T,Sezerman OU,Shi L,Shi T,Siam R,Song LH,Suzuki H,Court DS,Tighe SW,Tong X,Udekwu KI,Ugalde JA,Valentine B,Vassilev DI,Vayndorf EM,Velavan TP,Wu J,Zambrano MM,Zhu J,Zhu S,Mason CE,International MetaSUB Consortium

Cell

June 24, 2021

Abudayyeh OO,Gootenberg JS

Science

May 28, 2021

Schermer B,Fabretti F,Damagnez M,Di Cristanziano V,Heger E,Arjune S,Tanner NA,Imhof T,Koch M,Ladha A,Joung J,Gootenberg JS,Abudayyeh OO,Burst V,Zhang F,Klein F,Benzing T,Müller RU

PLoS One

November 2, 2020

Joung J,Ladha A,Saito M,Kim NG,Woolley AE,Segel M,Barretto RP,Ranu A,Macrae RK,Faure G, Ioannidi EI, Krajeski Rn, Bruneau R, Huang M, Yu XG, Li JZ, Walker BD, Hung DT, Greninger AL, Jerome KR, Gootenberg JS, Abudayyeh OO, Zhang F.

N. Engl. J. Med.

October 8, 2020

Zetsche B,Abudayyeh OO,Gootenberg JS,Scott DA,Zhang F

Keio J. Med.

September 25, 2020

Patchsung M,Jantarug K,Pattama A,Aphicho K,Suraritdechachai S,Meesawat P,Sappakhaw K,Leelahakorn N,Ruenkam T,Wongsatit T,Athipanyasilp N,Eiamthong B,Lakkanasirorat B,Phoodokmai T,Niljianskul N,Pakotiprapha D,Chanarat S,Homchan A,Tinikul R,Kamutira P,Phiwkaow K,Soithongcharoen S,Kantiwiriyawanitch C,Pongsupasa V,Trisrivirat D,Jaroensuk J,Wongnate T,Maenpuen S,Chaiyen P,Kamnerdnakta S,Swangsri J,Chuthapisith S,Sirivatanauksorn Y,Chaimayo C,Sutthent R,Kantakamalakul W,Joung J,Ladha A,Jin X,Gootenberg JS,Abudayyeh OO,Zhang F,Horthongkham N,Uttamapinant C

Nat Biomed Eng

August 26, 2020

Baerwald MR,Goodbla AM,Nagarajan RP,Gootenberg JS,Abudayyeh OO,Zhang F,Schreier AD

Mol. Ecol. Resour.

July 1, 2020

Ladha A,Joung J,Abudayyeh OO,Gootenberg JS,Zhang F

medRxiv

May 8, 2020

Zhang F,Abudayyeh OO,Gootenberg JS

White paper

February 1, 2020

Freije CA,Myhrvold C,Boehm CK,Lin AE,Welch NL,Carter A,Metsky HC,Luo CY,Abudayyeh OO,Gootenberg JS,Yozwiak NL,Zhang F,Sabeti PC

Mol. Cell

December 5, 2019

Kellner MJ,Koob JG,Gootenberg JS,Abudayyeh OO,Zhang F

Nat. Protoc.

September 23, 2019

Abudayyeh OO,Gootenberg JS,Franklin B,Koob J,Kellner MJ,Ladha A,Joung J,Kirchgatterer P,Cox DBT,Zhang F

Science

July 11, 2019

Abudayyeh OO,Gootenberg JS,Kellner MJ,Zhang F

CRISPR J

June 1, 2019

Hirano S,Abudayyeh OO,Gootenberg JS,Horii T,Ishitani R,Hatada I,Zhang F,Nishimasu H,Nureki O

Nat. Commun.

April 29, 2019

Abudayyeh OO,Gootenberg JS

CRISPR J

April 1, 2019

Slaymaker IM,Mesa P,Kellner MJ,Kannan S,Brignole E,Koob J,Feliciano PR,Stella S,Abudayyeh OO,Gootenberg JS,Strecker J,Montoya G,Zhang F

Cell Rep.

March 26, 2019

Nishimasu H,Shi X,Ishiguro S,Gao L,Hirano S,Okazaki S,Noda T,Abudayyeh OO,Gootenberg JS,Mori H,Oura S,Holmes B,Tanaka M,Seki M,Hirano H,Aburatani H,Ishitani R,Ikawa M,Yachie N,Zhang F,Nureki O

Science

September 21, 2018

Tycko J,Barrera LA,Huston NC,Friedland AE,Wu X,Gootenberg JS,Abudayyeh OO,Myer VE,Wilson CJ,Hsu PD

Nat. Commun.

July 27, 2018

Myhrvold C,Freije CA,Gootenberg JS,Abudayyeh OO,Metsky HC,Durbin AF,Kellner MJ,Tan AL,Paul LM,Parham LA,Garcia KF,Barnes KG,Chak B,Mondini A,Nogueira ML,Isern S,Michael SF,Lorenzana I,Yozwiak NL,MacInnis BL,Bosch I,Gehrke L,Zhang F,Sabeti PC

Science

April 27, 2018

Gootenberg JS,Abudayyeh OO,Kellner MJ,Joung J,Collins JJ,Zhang F

Science

April 27, 2018

Cox DBT,Gootenberg JS,Abudayyeh OO,Franklin B,Kellner MJ,Joung J,Zhang F

Science

November 24, 2017

Abudayyeh OO,Gootenberg JS,Essletzbichler P,Han S,Joung J,Belanto JJ,Verdine V,Cox DB,Kellner MJ,Regev A,Lander ES,Voytas DF,Ting AY,Zhang F

Nature

October 4, 2017

Kim JW,Abudayyeh OO,Yeerna H,Yeang CH,Stewart M,Jenkins RW,Kitajima S,Konieczkowski DJ,Medetgul-Ernar K,Cavazos T,Mah C,Ting S,Van Allen EM,Cohen O,Mcdermott J,Damato E,Aguirre AJ,Liang J,Liberzon A,Alexe G,Doench J,Ghandi M,Vazquez F,Weir BA,Tsherniak A,Subramanian A,Meneses-Cime K,Park J,Clemons P,Garraway LA,Thomas D,Boehm JS,Barbie DA,Hahn WC,Mesirov JP,Tamayo P

Cell Systems

August 23, 2017

Joung J,Engreitz JM,Konermann S,Abudayyeh OO,Verdine VK,Aguet F,Gootenberg JS,Sanjana NE,Wright JB,Fulco CP,Tseng YY,Yoon CH,Boehm JS,Lander ES,Zhang F

Nature

August 17, 2017

Gootenberg JS,Abudayyeh OO,Lee JW,Essletzbichler P,Dy AJ,Joung J,Verdine V,Donghia N,Daringer NM,Freije CA,Myhrvold C,Bhattacharyya RP,Livny J,Regev A,Koonin EV,Hung DT,Sabeti PC,Collins JJ,Zhang F

Science

April 13, 2017

Joung J,Konermann S,Gootenberg JS,Abudayyeh OO,Platt RJ,Brigham MD,Sanjana NE,Zhang F

Nat. Protoc.

April 1, 2017

Yamada M,Watanabe Y,Gootenberg JS,Hirano H,Ran FA,Nakane T,Ishitani R,Zhang F,Nishimasu H,Nureki O

Mol. Cell

March 16, 2017

Shmakov S,Smargon A,Scott D,Cox D,Pyzocha N,Yan W,Abudayyeh OO,Gootenberg JS,Makarova KS,Wolf YI,Severinov K,Zhang F,Koonin EV

Nat. Rev. Microbiol.

March 1, 2017

Smargon AA,Cox DB,Pyzocha NK,Zheng K,Slaymaker IM,Gootenberg JS,Abudayyeh OA,Essletzbichler P,Shmakov S,Makarova KS,Koonin EV,Zhang F

Mol. Cell

February 16, 2017

Zetsche B,Heidenreich M,Mohanraju P,et al.

Nature

December 5, 2016

Abudayyeh OO,Gootenberg JS,Konermann S,Joung J,Slaymaker IM,Cox DB,Shmakov S,Makarova KS,Semenova E,Minakhin L,Severinov K,Regev A,Lander ES,Koonin EV,Zhang F

Science

August 5, 2016

Kim JW,Botvinnik OB,Abudayyeh O,Birger C,Rosenbluh J,Shrestha Y,Abazeed ME,Hammerman PS,DiCara D,Konieczkowski DJ,Johannessen CM,Liberzon A,Alizad-Rahvar AR,Alexe G,Aguirre A,Ghandi M,Greulich H,Vazquez F,Weir BA,Van Allen EM,Tsherniak A,Shao DD,Zack TI,Noble M,Getz G,Beroukhim R,Garraway LA,Ardakani M,Romualdi C,Sales G,Barbie DA,Boehm JS,Hahn WC,Mesirov JP,Tamayo P

Nat. Biotechnol.

May 1, 2016

Hirano H,Gootenberg JS,Horii T,Abudayyeh OO,Kimura M,Hsu PD,Nakane T,Ishitani R,Hatada I,Zhang F,Nishimasu H,Nureki O

Cell

February 25, 2016

Shmakov S,Abudayyeh OO,Makarova KS,Wolf YI,Gootenberg JS,Semenova E,Minakhin L,Joung J,Konermann S,Severinov K,Zhang F,Koonin EV

Mol. Cell

November 5, 2015

Dahlman JE,Abudayyeh OO,Joung J,Gootenberg JS,Zhang F,Konermann S

Nat. Biotechnol.

November 1, 2015

Zetsche B,Gootenberg JS,Abudayyeh OO,Slaymaker IM,Makarova KS,Essletzbichler P,Volz SE,Joung J,van der Oost J,Regev A,Koonin EV,Zhang F

Cell

October 22, 2015

Ran FA,Cong L,Yan WX,Scott DA,Gootenberg JS,Kriz AJ,Zetsche B,Shalem O,Wu X,Makarova KS,Koonin EV,Sharp PA,Zhang F

Nature

April 9, 2015

Konermann S,Brigham MD,Trevino AE,Joung J,Abudayyeh OO,Barcena C,Hsu PD,Habib N,Gootenberg JS,Nishimasu H,Nureki O,Zhang F

Nature

January 29, 2015

Konieczkowski DJ,Johannessen CM,Abudayyeh O,Kim JW,Cooper ZA,Piris A,Frederick DT,Barzily-Rokni M,Straussman R,Haq R,Fisher DE,Mesirov JP,Hahn WC,Flaherty KT,Wargo JA,Tamayo P,Garraway LA

Cancer Discov.

July 1, 2014

Ran FA,Hsu PD,Lin CY,Gootenberg JS,Konermann S,Trevino AE,Scott DA,Inoue A,Matoba S,Zhang Y,Zhang F

Cell

September 12, 2013

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